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PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

Identifieur interne : 001626 ( Main/Exploration ); précédent : 001625; suivant : 001627

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

Auteurs : Luci A Conde [Espagne] ; Juan M. Vaquerizas [Espagne] ; Herna N Dopazo [Espagne] ; Leonardo Arbiza [Espagne] ; Joke Reumers [Belgique] ; Frederic Rousseau [Belgique] ; Joost Schymkowitz [Belgique] ; Joaqui N Dopazo [Espagne]

Source :

Nucleic Acids Research [ 0305-1048 ] ; 2006-07-01.

RBID : ISTEX:657E51D5FFB64D2EF59E1B769D311A730E79ED3F

Abstract

We have developed a web tool, PupaSuite, for the selection of single nucleotide polymorphisms (SNPs) with potential phenotypic effect, specifically oriented to help in the design of large-scale genotyping projects. PupaSuite uses a collection of data on SNPs from heterogeneous sources and a large number of pre-calculated predictions to offer a flexible and intuitive interface for selecting an optimal set of SNPs. It improves the functionality of PupaSNP and PupasView programs and implements new facilities such as the analysis of user's data to derive haplotypes with functional information. A new estimator of putative effect of polymorphisms has been included that uses evolutionary information. Also SNPeffect database predictions have been included. The PupaSuite web interface is accessible through http://pupasuite.bioinfo.cipf.es and through http://www.pupasnp.org.

Url:

https://api.istex.fr/document/657E51D5FFB64D2EF59E1B769D311A730E79ED3F/fulltext/pdf

DOI: 10.1093/nar/gkl071

Affiliations:

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Le document en format XML

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<front><div type="abstract" xml:lang="en">We have developed a web tool, PupaSuite, for the selection of single nucleotide polymorphisms (SNPs) with potential phenotypic effect, specifically oriented to help in the design of large-scale genotyping projects. PupaSuite uses a collection of data on SNPs from heterogeneous sources and a large number of pre-calculated predictions to offer a flexible and intuitive interface for selecting an optimal set of SNPs. It improves the functionality of PupaSNP and PupasView programs and implements new facilities such as the analysis of user's data to derive haplotypes with functional information. A new estimator of putative effect of polymorphisms has been included that uses evolutionary information. Also SNPeffect database predictions have been included. The PupaSuite web interface is accessible through http://pupasuite.bioinfo.cipf.es and through http://www.pupasnp.org.</div>
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PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

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Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri